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biocore

Collaboratively developed bioinformatics software.

123 followers
Cyberspace
http://biocore.github.io/

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gneiss gneiss Public

compositional data analysis toolbox

Jupyter Notebook 60 27

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Showing 10 of 92 repositories

microsetta-admin Public

biocore/microsetta-admin’s past year of commit activity

Python 0 BSD-3-Clause 10 16 4 Updated Mar 2, 2026
pysyndna Public
Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

biocore/pysyndna’s past year of commit activity

Python 0 0 0 0 Updated Feb 28, 2026
q2-birdman Public Forked from ahdilmore/MARS_Birdman
Outlines for running birdman

biocore/q2-birdman’s past year of commit activity

Python 2 BSD-3-Clause 4 0 0 Updated Feb 26, 2026
kl-metapool Public
Jupyter notebooks to assist with sample processing

biocore/kl-metapool’s past year of commit activity

Python 9 MIT 20 58 (2 issues need help) 3 Updated Feb 24, 2026
microsetta-interface Public
The Microsetta participant facing user interface

biocore/microsetta-interface’s past year of commit activity

Jinja 1 BSD-3-Clause 17 44 4 Updated Jan 21, 2026
microsetta-private-api Public
A private microservice to support The Microsetta Initiative

biocore/microsetta-private-api’s past year of commit activity

Python 6 BSD-3-Clause 19 63 0 Updated Jan 21, 2026
q2-katharoseq Public

biocore/q2-katharoseq’s past year of commit activity

Python 1 BSD-3-Clause 5 1 3 Updated Jan 16, 2026
emperor Public
Emperor a tool for the analysis and visualization of large microbial ecology datasets

biocore/emperor’s past year of commit activity

JavaScript 54 49 63 1 Updated Jan 12, 2026
biom-format Public
The Biological Observation Matrix (BIOM) Format Project

biocore/biom-format’s past year of commit activity

Python 97 93 26 3 Updated Dec 23, 2025
unifrac-binaries Public

biocore/unifrac-binaries’s past year of commit activity

C++ 2 BSD-3-Clause 9 4 0 Updated Dec 5, 2025

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