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@OpenMS

OpenMS

OpenMS is an open-source software library for LC-MS data management and analysis
README.md

Welcome to @OpenMS!

@OpenMS is an open-source C++ software library for LC-MS data management and analysis with python wrappers, a large modular toolset and workflows for e.g., Galaxy, KNIME and nextflow.

Here's how to get started:

  • 📚 Browse through the main library code under OpenMS/OpenMS
  • 👩‍💻 Check out the documentation.
  • 🙋‍♀️ Come and say hi on our Discord!
  • 🍿 Tune in for news about developer/user meetings and events, get involved!
  • 🌈 Please abide by our community code of conduct

All Jobs Status

Repository Status
OpenMS Nightly
workflow
workflow
pyOpenMS workflow
Building latest jupyter Notebooks and push to master+ipynb
Build and Test code in notebooks
openms.de Netlify Status
CDash (external server) build status

Pinned Loading

  1. OpenMS OpenMS Public

    The codebase of the OpenMS project

    C++ 569 404

  2. OpenMS-docs OpenMS-docs Public

    OpenMS Documentation.

    CSS 2 27

  3. contrib contrib Public

    Automated CMake build scripts for the OpenMS contrib libraries

    CMake 22

  4. THIRDPARTY THIRDPARTY Public

    External binary dependencies (e.g. search engine binaries) packaged in installers

    2 13

  5. dockerfiles dockerfiles Public archive

    This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.

    Dockerfile 2 8

  6. pyopenms-docs pyopenms-docs Public

    pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

    Python 50 75

Repositories

Showing 10 of 39 repositories
  • OpenMS Public

    The codebase of the OpenMS project

    OpenMS/OpenMS’s past year of commit activity
    C++ 569 404 270 (4 issues need help) 71 Updated Mar 5, 2026
  • FLASHApp Public
    OpenMS/FLASHApp’s past year of commit activity
    Python 0 0 0 5 Updated Mar 5, 2026
  • contrib Public

    Automated CMake build scripts for the OpenMS contrib libraries

    OpenMS/contrib’s past year of commit activity
    CMake 0 22 4 3 Updated Mar 5, 2026
  • streamlit-deployment Public

    Streamlit deployment with Docker

    OpenMS/streamlit-deployment’s past year of commit activity
    1 10 0 5 Updated Mar 5, 2026
  • quantms-web Public
    OpenMS/quantms-web’s past year of commit activity
    Python 0 1 0 9 Updated Mar 5, 2026
  • pyopenms_viz Public

    Streamlining Mass Spectrometry Data Visualization with Pandas

    OpenMS/pyopenms_viz’s past year of commit activity
    Jupyter Notebook 21 BSD-3-Clause 19 9 (1 issue needs help) 7 Updated Mar 4, 2026
  • streamlit-template Public
    OpenMS/streamlit-template’s past year of commit activity
    Python 16 35 33 22 Updated Mar 3, 2026
  • usage_plots Public

    Scripts for generating plots about the usage of OpenMS

    OpenMS/usage_plots’s past year of commit activity
    R 2 4 0 0 Updated Mar 2, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    OpenMS/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,797 0 0 Updated Mar 2, 2026
  • OpenMS-website Public

    Hugo sources for the OpenMS website

    OpenMS/OpenMS-website’s past year of commit activity
    HTML 0 21 4 2 Updated Feb 23, 2026
View all repositories