Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- neuron-fragment-extractor Public
FragmentExtractor is a Python tool for generate data to train machine learning models that correct split and merge errors in neuron segmentations.
AllenNeuralDynamics/neuron-fragment-extractor’s past year of commit activity - aind-vr-foraging-primary-data-nwb-packaging Public
Capsule that packages primary data for VR Foraging task using data contract
AllenNeuralDynamics/aind-vr-foraging-primary-data-nwb-packaging’s past year of commit activity - harp.device.quad-dac Public
0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
AllenNeuralDynamics/harp.device.quad-dac’s past year of commit activity - hcr-unmix-to-cells Public
A capsule to be run on HCR data after it has been processed by main the pipeline. Can run alternate unmixing strategies and generate cell x gene tables annotated with cell labels (e.g. de novo clustering or taxonomy mapping).
AllenNeuralDynamics/hcr-unmix-to-cells’s past year of commit activity
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