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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 30 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 28 10

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 17 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 579 repositories
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 30 MIT 19 44 6 Updated Mar 6, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    C# 0 MIT 0 7 2 Updated Mar 6, 2026
  • aind-disrnn-wrapper Public

    Job wrapper for AIND-disRNN project

    AllenNeuralDynamics/aind-disrnn-wrapper’s past year of commit activity
    Python 0 MIT 1 10 2 Updated Mar 6, 2026
  • harp.device.quad-dac Public

    0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC

    AllenNeuralDynamics/harp.device.quad-dac’s past year of commit activity
    C++ 0 MIT 0 23 0 Updated Mar 6, 2026
  • aind-hcr-qc Public

    Code to generate QC plots for HCR data

    AllenNeuralDynamics/aind-hcr-qc’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 1 Updated Mar 6, 2026
  • parallax Public

    Automatic detection of probe position from multiple camera views

    AllenNeuralDynamics/parallax’s past year of commit activity
    Python 4 MIT 1 8 2 Updated Mar 6, 2026
  • lamf-analysis Public

    Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean

    AllenNeuralDynamics/lamf-analysis’s past year of commit activity
    Jupyter Notebook 1 MIT 1 21 1 Updated Mar 6, 2026
  • neuron-fragment-extractor Public

    FragmentExtractor is a Python tool for generate data to train machine learning models that correct split and merge errors in neuron segmentations.

    AllenNeuralDynamics/neuron-fragment-extractor’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 6, 2026
  • aind-video-utils Public

    Utilities to work with video files

    AllenNeuralDynamics/aind-video-utils’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 6, 2026
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 17 MIT 13 32 1 Updated Mar 6, 2026
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